../../tmp/servers/virsirnadb/84169607
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| EU256052.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V403/2006, complet | 6388 | .................g. | 6406 | 94 |
| EU256055.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V6/2001, complete | 6385 | .................g. | 6403 | 94 |
| EU256057.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V702/2006, complet | 6397 | .................g. | 6415 | 94 |
| EU256058.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V8/2005, complete | 6375 | .................g. | 6393 | 94 |
| EU256069.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V229/2006, complet | 6370 | .................g. | 6388 | 94 |
| EU256070.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V232/2003, complet | 6382 | .................g. | 6400 | 94 |
| EU256071.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V234/2004, complet | 6358 | .................g. | 6376 | 94 |
| EU256072.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V238/2005, complet | 6370 | .................g. | 6388 | 94 |
| EU256074.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V264/2005, complet | 6387 | .................g. | 6405 | 94 |
| EU255963.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V166/1992, complet | 6390 | .................g. | 6408 | 94 |
| EU255964.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V167/1992, complet | 6373 | .................g. | 6391 | 94 |
| EU255965.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V168/1990, complet | 6387 | .................g. | 6405 | 94 |
| EU255966.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V170/1997, complet | 6394 | .................g. | 6412 | 94 |
| EU255967.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V171/1997, complet | 6368 | .................g. | 6386 | 94 |
| EU255968.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V173/1989, complet | 6373 | .................g. | 6391 | 94 |
| EU255970.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V176/1992, complet | 6381 | .................g. | 6399 | 94 |
| EU255973.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V180/1990, complet | 6384 | .................g. | 6402 | 94 |
| EU255975.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V183/1994, complet | 6388 | .................g. | 6406 | 94 |
| EU255976.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V184/1992, complet | 6384 | .................g. | 6402 | 94 |
| EU255977.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V187/1991, complet | 6388 | .................g. | 6406 | 94 |
| EU255978.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V188/1991, complet | 6377 | .................g. | 6395 | 94 |
| EU255979.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V189/1991, complet | 6390 | .................g. | 6408 | 94 |
| EU255980.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V190/1990, complet | 6381 | .................g. | 6399 | 94 |
| EU255981.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V191/1990, complet | 6396 | .................g. | 6414 | 94 |
| EU255982.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V194/1990, complet | 6387 | .................g. | 6405 | 94 |
| EU255983.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V195/1990, complet | 6382 | .................g. | 6400 | 94 |
| EU255984.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V200/1990, complet | 6375 | .................g. | 6393 | 94 |
| EU255985.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V201/1991, complet | 6392 | .................g. | 6410 | 94 |
| EU255986.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V203/1989, complet | 6390 | .................g. | 6408 | 94 |
| EU255988.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V206/1995, complet | 6379 | .................g. | 6397 | 94 |
| EU255989.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V208/1990, complet | 6396 | .................g. | 6414 | 94 |
| EU255990.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V209/1992, complet | 6388 | .................g. | 6406 | 94 |
| EU255991.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V210/1989, complet | 6378 | .................g. | 6396 | 94 |
| EU255992.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V213/1992, complet | 6384 | .................g. | 6402 | 94 |
| FJ024087.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1705/2007, comple | 6390 | .................g. | 6408 | 94 |
| FJ024274.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1707/2007, comple | 6316 | .................g. | 6334 | 94 |
| FJ024275.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1708/2007, comple | 6355 | .................g. | 6373 | 94 |
| FJ024278.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1713/2007, comple | 6357 | .................g. | 6375 | 94 |
| FJ024280.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1717/2007, comple | 6372 | .................g. | 6390 | 94 |
| FJ024281.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1718/2007, comple | 6387 | .................g. | 6405 | 94 |
| FJ024282.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1719/2005, comple | 6375 | .................g. | 6393 | 94 |
| EU862826.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V198/1989, partial | 6380 | .................g. | 6398 | 94 |
| EU862827.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V218/1993, partial | 6380 | .................g. | 6398 | 94 |
| FJ181999.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1706/2007, comple | 6374 | .................g. | 6392 | 94 |
| FJ182000.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1712/2007, comple | 6357 | .................g. | 6375 | 94 |
| FJ182001.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1716/2007, comple | 6381 | .................g. | 6399 | 94 |
| FJ205867.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1709/2007, comple | 6423 | .................g. | 6441 | 94 |
| FJ205868.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1714/2007, comple | 6367 | .................g. | 6385 | 94 |
| FJ205869.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1720/2006, comple | 6357 | .................g. | 6375 | 94 |
| FJ390394.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1745/2008, comple | 6373 | .................g. | 6391 | 94 |
| FJ390395.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1747/2008, comple | 6350 | .................g. | 6368 | 94 |
| FJ390399.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1751/2007, comple | 6334 | .................g. | 6352 | 94 |
| FJ410172.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1746/2008, comple | 6357 | .................g. | 6375 | 94 |
| EU781824.1 | Hepatitis C virus subtype 1a isolate DN14, complete genome | 6409 | .................g. | 6427 | 94 |
| AB520610.1 | Hepatitis C virus subtype 1a genomic RNA, complete genome, strain: HC | 6463 | .................g. | 6481 | 94 |
| EU862828.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V12/2004, complete | 6396 | .................g. | 6414 | 94 |
| EU862832.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V27/2003, complete | 6377 | .................g. | 6395 | 94 |
| EU862834.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V37/2004, complete | 6308 | .................g. | 6326 | 94 |
| EU862836.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V244/2003, complet | 6389 | .................g. | 6407 | 94 |
| EU862838.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V165/1992, complet | 6397 | .................g. | 6415 | 94 |
| EU862839.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V175/1990, complet | 6391 | .................g. | 6409 | 94 |
| EU862840.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V40/2003, complete | 6404 | .................g. | 6422 | 94 |
| EU862841.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V48/2003, complete | 6378 | .................g. | 6396 | 94 |
| AF009606.1 | Hepatitis C virus subtype 1a polyprotein gene, complete cds | 6463 | .................g. | 6481 | 94 |
| AF511950.1 | Hepatitis C virus isolate XF224 polyprotein-like gene, complete seque | 6435 | .................__ | 6451 | 89 |
| EU155345.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V221/2002, complet | 6371 | .................__ | 6387 | 89 |
| EU155350.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V256/2003, complet | 6344 | .................__ | 6360 | 89 |
| EU155239.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V54/2004, complete | 6381 | .................__ | 6397 | 89 |
| EU482841.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V387/2004, complet | 6396 | .................__ | 6412 | 89 |
| EU482844.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V436/2006, complet | 6397 | .................__ | 6413 | 89 |
| EU482866.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V460/2006, complet | 6396 | .................__ | 6412 | 89 |
| EU482872.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V261/2004, complet | 6395 | .................__ | 6411 | 89 |
| EU482873.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V28/2003, complete | 6374 | .................__ | 6390 | 89 |
| EU155268.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V396/2006, complet | 6358 | .................__ | 6374 | 89 |
| EU155272.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V404/2006, complet | 6359 | .................__ | 6375 | 89 |
| EU155340.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V185/1991, complet | 6358 | .................__ | 6374 | 89 |
| EU155352.2 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V262/2004, complet | 6389 | .................__ | 6405 | 89 |
| EU155353.2 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V267/2005, complet | 6381 | .................__ | 6397 | 89 |
| EU569723.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V13/2005, complete | 6382 | .................__ | 6398 | 89 |
| EU255935.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V462/2007, complet | 6393 | .................__ | 6409 | 89 |
| EU255940.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V433/2006, complet | 6396 | .................__ | 6412 | 89 |
| EU255941.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V697/2006, complet | 6395 | .................__ | 6411 | 89 |
| EU255959.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V268/2003, complet | 6356 | .................__ | 6372 | 89 |
| EU255994.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V103/2005, complet | 6373 | .................__ | 6389 | 89 |
| EU256038.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V99/2004, complete | 6394 | .................__ | 6410 | 89 |
| EU256051.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V4/2005, complete | 6385 | .................__ | 6401 | 89 |
| FJ024276.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1710/2007, comple | 6355 | .................__ | 6371 | 89 |
| EU862824.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V31/2004, partial | 6380 | .................__ | 6396 | 89 |
| EU781804.1 | Hepatitis C virus subtype 1a isolate 02-46, complete genome | 6378 | .................__ | 6394 | 89 |
| EU155296.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V332/2002, complet | 6380 | _................g. | 6397 | 89 |
| EU155313.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V413/2003, complet | 6372 | _................g. | 6389 | 89 |
| EU256039.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V16/2004, complete | 6383 | _................g. | 6400 | 89 |
| EU155276.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V432/2002, complet | 6382 | ................___ | 6397 | 84 |
| EU155339.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V172/1990, complet | 6358 | ................___ | 6373 | 84 |
| EU256024.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V72/2006, complete | 6358 | ................___ | 6373 | 84 |
| EU862831.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V400/2006, complet | 6381 | ................___ | 6396 | 84 |
| D10749.1 | HPCHCJ1 Hepatitis C virus genomic RNA, complete genome, isolate: HC-J1 | 6463 | ....a............g. | 6481 | 89 |
| AF011752.1 | Hepatitis C virus strain H77 pCV-H11 polyprotein gene, complete cds | 6463 | .....g...........g. | 6481 | 89 |
| EF407444.1 | Hepatitis C virus isolate 6030 polyprotein gene, complete cds | 6384 | .t...............g. | 6402 | 89 |
| EF407453.1 | Hepatitis C virus isolate 4035 polyprotein gene, complete cds | 6410 | .t...............g. | 6428 | 89 |
| EU155241.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V71/2002, complete | 6359 | .............a...g. | 6377 | 89 |
| EU362884.1 | Hepatitis C virus isolate 4035_FU24 polyprotein (pol) gene, complete | 6425 | .t...............g. | 6443 | 89 |
| EU362895.1 | Hepatitis C virus isolate 7043_FU24 polyprotein (pol) gene, complete | 6381 | ...........c.....g. | 6399 | 89 |
| EU155240.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V68/2004, complete | 6381 | .t...............g. | 6399 | 89 |
| EU482831.1 | Hepatitis C virus subtype 1a isolate HCV-1a/DE/BID-V25/2003, complete | 6369 | ...........c.....g. | 6387 | 89 |
| EU482845.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V438/2006, complet | 6396 | ...........c.....g. | 6414 | 89 |
| EU482850.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V186/1990, complet | 6358 | ....a............g. | 6376 | 89 |
| EU482863.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V456/2006, complet | 6393 | ....a............g. | 6411 | 89 |
| EU482865.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V46/2003, complete | 6369 | .............a...g. | 6387 | 89 |
| EU482876.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V330/2002, complet | 6398 | .t...............g. | 6416 | 89 |
| EU482884.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V38/2004, complete | 6153 | .....t...........g. | 6171 | 89 |
| EU155273.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V406/2006, complet | 6332 | .....t...........g. | 6350 | 89 |
| EU155298.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V334/2002, complet | 6393 | .t...............g. | 6411 | 89 |
| EU234065.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V212/1990, complet | 6358 | .t...............g. | 6376 | 89 |
| EU595698.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V44/2001, complete | 6380 | .....t...........g. | 6398 | 89 |
| EU255938.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V88/2003, complete | 6395 | .....t...........g. | 6413 | 89 |
| EU255951.1 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V245/2005, complet | 6395 | .t...............g. | 6413 | 89 |
| EU155347.2 | Hepatitis C virus subtype 1a isolate HCV-1a/CH/BID-V239/2005, complet | 6374 | .....t...........g. | 6392 | 89 |
| EU256015.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V57/2004, complete | 6381 | .....t...........g. | 6399 | 89 |